Running Header: ScanMatch ScanMatch: A Novel Method for Comparing Fixation Sequences

نویسندگان

  • Filipe Cristino
  • Sebastiaan Mathôt
  • Jan Theeuwes
  • Iain D. Gilchrist
چکیده

We present a novel approach to compare saccadic eye movement sequences based on the Needleman-Wunsch algorithm used in bioinformatics to compare DNA sequences. In the proposed method, the saccade sequence is spatially and temporally binned and then recoded to create a sequence of letters which retains fixation location, time and order information. The comparison of two letter sequences is made by maximising the similarity score computed from a substitution matrix which provides the score for all letter pair substitutions and a penalty gap. The substitution matrix provides a meaningful link between each location coded by the individual letters. This link could be distance but could also encode any useful dimension including perceptual or semantic space. We show, by using synthetic and behavioural data, the benefits of this method over existing methods. The Scanmatch toolbox for Matlab is freely available online.

برای دانلود رایگان متن کامل این مقاله و بیش از 32 میلیون مقاله دیگر ابتدا ثبت نام کنید

ثبت نام

اگر عضو سایت هستید لطفا وارد حساب کاربری خود شوید

منابع مشابه

ScanMatch: a novel method for comparing fixation sequences.

We present a novel approach to comparing saccadic eye movement sequences based on the Needleman-Wunsch algorithm used in bioinformatics to compare DNA sequences. In the proposed method, the saccade sequence is spatially and temporally binned and then recoded to create a sequence of letters that retains fixation location, time, and order information. The comparison of two letter sequences is mad...

متن کامل

Determining Difference in Evolutionary Variation of Bacterial RecA proteins vs 16SrRNA Genes by using 16s_Toxonomy Tree

Background and Aims: The rate of variation in various genes of a bacterial species is different during evolution. Therefore, in systematic bacterial studies many researchers compare the phylogenetic tree of a particular gene to the standard tree of an rRNA gene. Regarding the importance of 16SrRNA gene and the evolutional process of RecA protein family, we investigated the changes in the select...

متن کامل

Design and construction of a micromilled fluidic device as part of a DNA biosensor

Under the Optonanogen project (EU contract IST-2001-37239), a novel biosensor has been developed, which incorporates a disposable acrylic polymethylmethacrylate (PMMA) fluidic header. This header is designed to deliver a sample to a series of chemically primed cantilevers where hybridization of target DNA sequences and resulting deflection of the cantilevers is detected optically. Two different...

متن کامل

Discovering Weighted Patterns in Intron Sequences Using Self-Adaptive Harmony Search and Back-Propagation Algorithms

A hybrid self-adaptive harmony search and back-propagation mining system was proposed to discover weighted patterns in human intron sequences. By testing the weights under a lazy nearest neighbor classifier, the numerical results revealed the significance of these weighted patterns. Comparing these weighted patterns with the popular intron consensus model, it is clear that the discovered weight...

متن کامل

ذخیره در منابع من


  با ذخیره ی این منبع در منابع من، دسترسی به آن را برای استفاده های بعدی آسان تر کنید

عنوان ژورنال:

دوره   شماره 

صفحات  -

تاریخ انتشار 2010